Cytoscaping
08/04/05 05:04 Filed in: Technology
I have been playing around with Cytoscape for a couple of hours now and it is quite an impressive tool. On my Athlon XP 2100+ with 1 GB RAM, it can render a network of ~3000 nodes and ~7000 interactions (edges) in 10-15 seconds. It also has a very extensible architecture through plugins, though there seem to be only a few available. One plugin that would be cool is to automatically annotate the current network with Gene Ontology (GO) terms.